MolNFT v1 · #151105 · protein
Human DYRK2 bound to scorzodihydrostilbene a
6HDP · Dual specificity tyrosine-phosphorylation-regulated kinase 2: “Human DYRK2 bound to scorzodihydrostilbene a”. X-ray diffraction, 2 ligands (FZ5, NA), 3 pockets (best druggability 0.67). MolNFT v1 #151105 on GenesisL1: 3D structure…
- PDB
- 6HDP
- Type
- protein
- Length
- 409 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dual specificity tyrosine-phosphorylation-regulated kinase 2
- EC
- 2.7.12.1
- UniProt
- Q92630
- Ligands
- FZ5, NA
- Pockets
- 3 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dual specificity tyrosine-phosphorylation-regulated kinase 2 (EC 2.7.12.1) | protein | 409 | 34% helix, 18% strand | Q92630 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 340 | 0.67 | 0.81 | 41 | FZ5 |
| 2 | 62 | 0.39 | 0.80 | 16 | empty |
| 3 | 53 | 0.30 | 0.75 | 12 | empty |
Modifications
Observed in the structure: 2 modified (phosphorylation).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q92630
- Elsewhere: RCSB PDB 6HDP · PDBe 6HDP · UniProt Q92630
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.