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MolNFT v1 · #150965 · protein

Structure of glutamate mutase reconstituted with homo-coenzyme B12

6H9E: “Structure of glutamate mutase reconstituted with homo-coenzyme B12”. X-ray diffraction, 2 ligands (B12, FWK). MolNFT v1 #150965 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6H9E
Type
protein
Length
1,240 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P80078, P80077
Ligands
B12, FWK

Structure

x-ray diffraction · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, C—protein137—P80078
B, D—protein483—P80077

Ligands and binding sites

  • B12 · Cobalamin · ligand · 2 copies · chains A, B, C, D
  • FWK · (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-ethyl-oxolane-3,4-diol · ligand · 2 copies · chains B, D
  • GOL · Glycerol · additive · 5 copies · chains A, B, C, D
  • TAR · D(-)-tartaric acid · additive · 2 copies · chains B, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6H9E · Structure of glutamate mutase reconstituted with homo-coenzyme B12 · the same entry in another collection · chain A against A, TM-score 1.00
  • P80077 · AlphaFold monomer V2.0 prediction for glutamate mutase epsilon subunit (P80077) · a predicted model of the same protein · chain B against A, TM-score 1.00
  • P80078 · AlphaFold monomer V2.0 prediction for glutamate mutase sigma subunit (P80078) · a predicted model of the same protein · chain A against A, TM-score 0.99

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