MolNFT v1 · #150905 · protein
Reductive aminase from aspergillus terreus in complex with NADPH4, cyclohexanone and allyl amine
6H7P: “Reductive aminase from aspergillus terreus in complex with NADPH4, cyclohexanone and allyl amine”. X-ray diffraction, 3 ligands (FVH, AYE, CYH), 2 pockets (best druggability 0.78). MolNFT v1 #150905 on GenesisL1: 3D structure…
- PDB
- 6H7P
- Type
- protein
- Length
- 565 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Reductive aminase
- UniProt
- Q0CCT3
- Ligands
- FVH, AYE, CYH
- Pockets
- 2 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 55% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Reductive aminase | protein | 282 | 56% helix, 13% strand | Q0CCT3 |
| B | Reductive aminase | protein | 283 | 54% helix, 13% strand | Q0CCT3 |
Ligands and binding sites
- FVH · [[(2~{R},3~{S},4~{R},5~{R})-5-[(3~{R})-3-aminocarbonylpiperidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R}, 5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate · ligand · 2 copies · chains A, B
- AYE · prop-2-en-1-amine · ligand · 2 copies · chains A, B
- CYH · Cyclohexanone · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 411 | 0.78 | 0.86 | 43 | FVH |
| 2 | 402 | 0.77 | 0.86 | 45 | FVH, AYE, CYH |
Interfaces
1 interface between chains.
- A–B · 4274 Ų buried · 33 hydrogen bonds · protein-protein
Compared structures
- 6H7P · Reductive Aminase from Aspergillus terreus in complex with NADPH4, cyclohexa and allyl… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0CCT3
- Elsewhere: RCSB PDB 6H7P · PDBe 6H7P · UniProt Q0CCT3
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