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Reductive aminase from aspergillus terreus in complex with NADPH4, cyclohexanone and allyl amine

Analyse Reductive aminase from aspergillus terreus in complex with NADPH4… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6H7P
Type
protein
Length
565 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Reductive aminase
UniProt
Q0CCT3
Ligands
FVH, AYE, CYH
Pockets
2 · best druggability 0.78

Structure

x-ray diffraction · 2 distinct chains · 55% helix, 13% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AReductive aminaseprotein28256% helix, 13% strandQ0CCT3
BReductive aminaseprotein28354% helix, 13% strandQ0CCT3

Ligands and binding sites

  • FVH · [[(2~{R},3~{S},4~{R},5~{R})-5-[(3~{R})-3-aminocarbonylpiperidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R}, 5~{R})-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate · ligand · 2 copies · chains A, B
  • AYE · prop-2-en-1-amine · ligand · 2 copies · chains A, B
  • CYH · Cyclohexanone · ligand · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
14110.780.8643FVH
24020.770.8645FVH, AYE, CYH

Interfaces

1 interface between chains.

  • A–B · 4274 Ų buried · 33 hydrogen bonds · protein-protein

Compared structures

  • 6H7P · Reductive Aminase from Aspergillus terreus in complex with NADPH4, cyclohexa and allyl… · the same entry in another collection · chain A against A, TM-score 1.00

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