MolNFT v1 · #150889 · protein
E1 enzyme for ubiquitin like protein activation.
6H78: “E1 enzyme for ubiquitin like protein activation.”. X-ray diffraction, 4 ligands (ATP, MG, ZN). MolNFT v1 #150889 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6H78
- Type
- protein
- Length
- 4,460 residues
- Chains
- 16
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9GZZ9
- Ligands
- ATP, MG, ZN, CL
Structure
x-ray diffraction · 12 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 283 | — | Q9GZZ9 |
| B | — | protein | 278 | — | Q9GZZ9 |
| C, E, N, P | — | protein | 286 | — | Q9GZZ9 |
| D | — | protein | 272 | — | Q9GZZ9 |
| F, O | — | protein | 271 | — | Q9GZZ9 |
| G | — | protein | 276 | — | Q9GZZ9 |
| H | — | protein | 280 | — | Q9GZZ9 |
| I | — | protein | 280 | — | Q9GZZ9 |
| J | — | protein | 279 | — | Q9GZZ9 |
| K | — | protein | 276 | — | Q9GZZ9 |
| L | — | protein | 280 | — | Q9GZZ9 |
| M | — | protein | 270 | — | Q9GZZ9 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 16 copies · chains A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
- MG · Magnesium ion · metal · 32 copies · chains A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
- ZN · Zinc ion · metal · 16 copies · chains A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
- CL · Chloride ion · ion · chains K
- EDO · 1,2-ethanediol · additive · 42 copies · chains A, B, E, F, C, D, G, H, J, I, K, L, P, M, N, O
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6H78 · E1 enzyme for ubiquitin like protein activation. · the same entry in another collection · chain J against J, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9GZZ9
- Elsewhere: RCSB PDB 6H78 · PDBe 6H78 · UniProt Q9GZZ9
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