MolNFT v1 · #150867 · protein

CR10 murine norovirus protruding domain in complex with the CD300LF receptor and glycochenodeoxycholate (gcdca)

6H6M: “CR10 murine norovirus protruding domain in complex with the CD300LF receptor and glycochenodeoxycholate…”. X-ray diffraction, 2 ligands (CHO, NA). MolNFT v1 #150867 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6H6M
Type: protein
Length: 1,434 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: A7YK37, Q6SJQ7
Ligands: CHO, NA

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	—	protein	303	—	A7YK37
E, F	—	protein	111	—	Q6SJQ7

Ligands and binding sites

CHO · Glycochenodeoxycholic acid · ligand · 4 copies · chains A, B, C, D
NA · Sodium ion · metal · 4 copies · chains A, E, B, C, F, D
EDO · 1,2-ethanediol · additive · 15 copies · chains A, B, C, D, E, F
PEG · Di(hydroxyethyl)ether · additive · chains E
PGE · Triethylene glycol · additive · chains F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6H6M · CR10 murine norovirus protruding domain in complex with the CD300lf receptor and… · the same entry in another collection · chain F against F, TM-score 1.00
Q6SJQ7 · AlphaFold monomer V2.0 prediction for CMRF35-like molecule 1 (Q6SJQ7) · a predicted model of the same protein · chain F against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A7YK37
Every structure of UniProt Q6SJQ7
Elsewhere: RCSB PDB 6H6M · PDBe 6H6M · UniProt A7YK37 · UniProt Q6SJQ7

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