Research workbench
CR10 murine norovirus protruding domain in complex with the CD300LF receptor and glycochenodeoxycholate (gcdca)
Analyse CR10 murine norovirus protruding domain in complex with the CD300LF receptor… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6H6M
- Type
- protein
- Length
- 1,434 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A7YK37, Q6SJQ7
- Ligands
- CHO, NA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | — | protein | 303 | — | A7YK37 |
| E, F | — | protein | 111 | — | Q6SJQ7 |
Ligands and binding sites
- CHO · Glycochenodeoxycholic acid · ligand · 4 copies · chains A, B, C, D
- NA · Sodium ion · metal · 4 copies · chains A, E, B, C, F, D
- EDO · 1,2-ethanediol · additive · 15 copies · chains A, B, C, D, E, F
- PEG · Di(hydroxyethyl)ether · additive · chains E
- PGE · Triethylene glycol · additive · chains F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6H6M · CR10 murine norovirus protruding domain in complex with the CD300lf receptor and… · the same entry in another collection · chain F against F, TM-score 1.00
- Q6SJQ7 · AlphaFold monomer V2.0 prediction for CMRF35-like molecule 1 (Q6SJQ7) · a predicted model of the same protein · chain F against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7YK37
- Every structure of UniProt Q6SJQ7
- Elsewhere: RCSB PDB 6H6M · PDBe 6H6M · UniProt A7YK37 · UniProt Q6SJQ7
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