MolNFT v1 · #150866 · protein
Murine norovirus protruding domain (CW3 strain) in complex with the CD300LF receptor and glycochenodeoxycholate (gcdca)
6H6L: “Murine norovirus protruding domain (CW3 strain) in complex with the CD300LF receptor and…”. X-ray diffraction, 3 ligands (CHO, MG, NA). MolNFT v1 #150866 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6H6L
- Type
- protein
- Length
- 1,624 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A7U694, Q6SJQ7
- Ligands
- CHO, MG, NA
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 300 | — | A7U694 |
| B, D | — | protein | 303 | — | A7U694 |
| C | — | protein | 300 | — | A7U694 |
| E | — | protein | 109 | — | Q6SJQ7 |
| F | — | protein | 111 | — | Q6SJQ7 |
| G | — | protein | 88 | — | Q6SJQ7 |
| H | — | protein | 110 | — | Q6SJQ7 |
Ligands and binding sites
- CHO · Glycochenodeoxycholic acid · ligand · 4 copies · chains A, B, C, D
- MG · Magnesium ion · metal · 8 copies · chains A, B, C, D
- NA · Sodium ion · metal · 4 copies · chains A, E, B, F, C, G, D, H
- EDO · 1,2-ethanediol · additive · chains B, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6H6L · Murine norovirus protruding domain (CW3 strain) in complex with the CD300lf receptor and… · the same entry in another collection · chain H against H, TM-score 1.00
- Q6SJQ7 · AlphaFold monomer V2.0 prediction for CMRF35-like molecule 1 (Q6SJQ7) · a predicted model of the same protein · chain E against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7U694
- Every structure of UniProt Q6SJQ7
- Elsewhere: RCSB PDB 6H6L · PDBe 6H6L · UniProt A7U694 · UniProt Q6SJQ7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.