Research workbench
Murine norovirus protruding domain (CW3 strain) in complex with the CD300LF receptor and glycochenodeoxycholate (gcdca)
Analyse Murine norovirus protruding domain (CW3 strain) in complex with the CD300LF… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6H6L
- Type
- protein
- Length
- 1,624 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A7U694, Q6SJQ7
- Ligands
- CHO, MG, NA
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 300 | — | A7U694 |
| B, D | — | protein | 303 | — | A7U694 |
| C | — | protein | 300 | — | A7U694 |
| E | — | protein | 109 | — | Q6SJQ7 |
| F | — | protein | 111 | — | Q6SJQ7 |
| G | — | protein | 88 | — | Q6SJQ7 |
| H | — | protein | 110 | — | Q6SJQ7 |
Ligands and binding sites
- CHO · Glycochenodeoxycholic acid · ligand · 4 copies · chains A, B, C, D
- MG · Magnesium ion · metal · 8 copies · chains A, B, C, D
- NA · Sodium ion · metal · 4 copies · chains A, E, B, F, C, G, D, H
- EDO · 1,2-ethanediol · additive · chains B, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6H6L · Murine norovirus protruding domain (CW3 strain) in complex with the CD300lf receptor and… · the same entry in another collection · chain H against H, TM-score 1.00
- Q6SJQ7 · AlphaFold monomer V2.0 prediction for CMRF35-like molecule 1 (Q6SJQ7) · a predicted model of the same protein · chain E against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7U694
- Every structure of UniProt Q6SJQ7
- Elsewhere: RCSB PDB 6H6L · PDBe 6H6L · UniProt A7U694 · UniProt Q6SJQ7
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