MolNFT v1 · #150769 · protein
Alcohol oxidase from phanerochaete chrysosporium mutant F101S
6H3O: “Alcohol oxidase from phanerochaete chrysosporium mutant F101S”. X-ray diffraction, 1 ligand (FAD), 20 pockets (best druggability 0.86). MolNFT v1 #150769 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6H3O
- Type
- protein
- Length
- 5,187 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alcohol oxidase
- UniProt
- T2M2J4
- Ligands
- FAD
- Pockets
- 20 · best druggability 0.86
Structure
x-ray diffraction · 4 distinct chains · 29% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | Alcohol oxidase | protein | 649 | 30% helix, 21% strand | T2M2J4 |
| B | Alcohol oxidase | protein | 647 | 30% helix, 21% strand | T2M2J4 |
| C, E, G, H | Alcohol oxidase | protein | 648 | 29% helix, 21% strand | T2M2J4 |
| F | Alcohol oxidase | protein | 650 | 29% helix, 21% strand | T2M2J4 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · 8 copies · chains A, B, C, D, E, F, G, H
- GOL · Glycerol · additive · 2 copies · chains B, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 711 | 0.86 | 0.90 | 98 | empty |
| 2 | 500 | 0.86 | 0.92 | 76 | FAD |
| 3 | 737 | 0.86 | 0.89 | 97 | empty |
| 4 | 544 | 0.86 | 0.92 | 72 | FAD |
| 5 | 427 | 0.86 | 0.94 | 57 | FAD |
Interfaces
15 interfaces between chains.
- B–G · 3070 Ų buried · 49 hydrogen bonds · protein-protein
- A–E · 3057 Ų buried · 48 hydrogen bonds · protein-protein
- D–H · 3045 Ų buried · 42 hydrogen bonds · protein-protein
- C–F · 3033 Ų buried · 43 hydrogen bonds · protein-protein
- F–H · 1924 Ų buried · 27 hydrogen bonds · protein-protein
Compared structures
- 6H3O · Alcohol oxidase from Phanerochaete chrysosporium mutant F101S · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt T2M2J4
- Elsewhere: RCSB PDB 6H3O · PDBe 6H3O · UniProt T2M2J4
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