MolNFT v1 · #150684 · protein
Myxococcus xanthus mgla bound to gtpgammas
6H17 · Mutual gliding-motility protein mgla: “Myxococcus xanthus mgla bound to gtpgammas”. X-ray diffraction, 3 ligands (GSP, MG, SO4), 2 pockets (best druggability 0.30). MolNFT v1 #150684 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6H17
- Type
- protein
- Length
- 193 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mutual gliding-motility protein mgla
- UniProt
- Q1DB04
- Ligands
- GSP, MG, SO4
- Pockets
- 2 · best druggability 0.30
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mutual gliding-motility protein mgla | protein | 193 | 38% helix, 30% strand | Q1DB04 |
Ligands and binding sites
- GSP · 5'-guanosine-diphosphate-monothiophosphate · ligand · chains A
- MG · Magnesium ion · metal · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 64 | 0.30 | 0.74 | 20 | MG, GSP |
| 2 | 56 | 0.26 | 0.73 | 13 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1DB04
- Elsewhere: RCSB PDB 6H17 · PDBe 6H17 · UniProt Q1DB04
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