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Myxococcus xanthus mgla bound to gtpgammas

Analyse Myxococcus xanthus mgla bound to gtpgammas in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6H17
Type: protein
Length: 193 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mutual gliding-motility protein mgla
UniProt: Q1DB04
Ligands: GSP, MG, SO4
Pockets: 2 · best druggability 0.30

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mutual gliding-motility protein mgla	protein	193	38% helix, 30% strand	Q1DB04

Ligands and binding sites

GSP · 5'-guanosine-diphosphate-monothiophosphate · ligand · chains A
MG · Magnesium ion · metal · chains A
SO4 · Sulfate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	64	0.30	0.74	20	MG, GSP
2	56	0.26	0.73	13	empty

Compared structures

6H17 · Myxococcus xanthus MglA bound to GTPgammaS · the same entry in another collection · chain A against A, TM-score 1.00
Q1DB04 · AlphaFold monomer V2.0 prediction for mutual gliding-motility protein mgla (Q1DB04) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q1DB04
Elsewhere: RCSB PDB 6H17 · PDBe 6H17 · UniProt Q1DB04

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