MolNFT v1 · #150609 · protein
Cryo-EM structure of the CBF3-msk complex of the budding yeast kinetochore
6GYU: “Cryo-EM structure of the CBF3-msk complex of the budding yeast kinetochore”. Electron microscopy, 1 ligand (ZN). MolNFT v1 #150609 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6GYU
- Type
- protein
- Length
- 2,192 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P40969, P35203, P52286, P32504
- Ligands
- ZN
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 579 | — | P40969 |
| A | — | protein | 423 | — | P35203 |
| C | — | protein | 527 | — | P40969 |
| D | — | protein | 151 | — | P52286 |
| E | — | protein | 512 | — | P32504 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6GYU · Cryo-EM structure of the CBF3-msk complex of the budding yeast kinetochore · the same entry in another collection · chain E against E, TM-score 1.00
- P40969 · AlphaFold monomer V2.0 prediction for centromere DNA-binding protein complex CBF3 subunit… · a predicted model of the same protein · chain C against A, TM-score 0.99
- P32504 · AlphaFold monomer V2.0 prediction for centromere DNA-binding protein complex CBF3 subunit… · a predicted model of the same protein · chain E against A, TM-score 0.96
- P35203 · AlphaFold monomer V2.0 prediction for centromere DNA-binding protein complex CBF3 subunit… · a predicted model of the same protein · chain A against A, TM-score 0.95
- P52286 · AlphaFold monomer V2.0 prediction for suppressor of kinetochore protein 1 (P52286) · a predicted model of the same protein · chain D against A, TM-score 0.83
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P40969
- Every structure of UniProt P35203
- Every structure of UniProt P52286
- Every structure of UniProt P32504
- Elsewhere: RCSB PDB 6GYU · PDBe 6GYU · UniProt P40969 · UniProt P35203 · UniProt P52286 · UniProt P32504
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