MolNFT v1 · #150508 · protein
Tailspike protein mutant E372Q (delta N471/S472) of E. COLI bacteriophage HK620 in complex with hexasaccharide
6GVP: “Tailspike protein mutant E372Q (delta N471/S472) of E. COLI bacteriophage HK620 in complex with hexasaccharide”. X-ray diffraction, 6 ligands (GLC, NDG, GLA). MolNFT v1 #150508 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6GVP
- Type
- protein
- Length
- 594 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9AYY6
- Ligands
- GLC, NDG, GLA, RAM, NAG, NA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 594 | — | Q9AYY6 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A
- NDG · 2-acetamido-2-deoxy-alpha-D-glucopyranose · sugar · chains A
- GLA · alpha-D-galactopyranose · sugar · chains A
- RAM · alpha-L-rhamnopyranose · sugar · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- NA · Sodium ion · metal · 3 copies · chains A
- FMT · Formic acid · additive · 3 copies · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6GVP · Tailspike protein mutant E372Q (delta N471/S472) of E. COLI bacteriophage HK620 in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AYY6
- Elsewhere: RCSB PDB 6GVP · PDBe 6GVP · UniProt Q9AYY6
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