MolNFT v1 · #150217 · DNA
Racemic crystal structure of a-DNA duplex formed from D(CCCGGG) in space group P21/N
6GN3 · DNA (5'-D(*CP*CP*CP*GP*GP*G)-3'): “Racemic crystal structure of a-DNA duplex formed from D(CCCGGG) in space group P21/N”. X-ray diffraction, 3 ligands (TMO, CO, CL). MolNFT v1 #150217 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6GN3
- Type
- DNA
- Length
- 36 nucleotides
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*CP*CP*GP*GP*G)-3')
- Ligands
- TMO, CO, CL
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | DNA (5'-D(*CP*CP*CP*GP*GP*G)-3') | dna | 6 | — | — |
Ligands and binding sites
- TMO · trimethylamine oxide · ligand · 4 copies · chains A, B, F
- CO · Cobalt (II) ion · metal · 2 copies · chains B, D
- CL · Chloride ion · ion · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
12 interfaces between chains.
- E–F · 324 Ų buried · 43 hydrogen bonds · nucleic-nucleic
- A–B · 323 Ų buried · 32 hydrogen bonds · nucleic-nucleic
- C–D · 318 Ų buried · 33 hydrogen bonds · nucleic-nucleic
- D–F · 163 Ų buried · 4 hydrogen bonds · nucleic-nucleic
- B–D · 144 Ų buried · 2 hydrogen bonds · nucleic-nucleic
Compared structures
- 6GN3 · Racemic crystal structure of A-DNA duplex formed from d(CCCGGG) in space group P21/n · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6GN3 · PDBe 6GN3
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