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MolNFT v1 · #150043 · protein

Crystal structure of the ferric enterobactin esterase (pfee) MUTANT(S157A) from pseudomonas aeruginosa in presence of enterobactin

6GI1: “Crystal structure of the ferric enterobactin esterase (pfee) MUTANT(S157A) from pseudomonas aeruginosa in…”. X-ray diffraction, 4 ligands (DBS, EB4, FE), 6 pockets (best druggability 0.72). MolNFT v1 #150043 on GenesisL1: 3D…

PDB
6GI1
Type
protein
Length
525 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Ferric enterobactin esterase
UniProt
Q9I0F2
Ligands
DBS, EB4, FE, NO3
Pockets
6 · best druggability 0.72

Structure

x-ray diffraction · 2 distinct chains · 33% helix, 25% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AFerric enterobactin esteraseprotein26133% helix, 25% strandQ9I0F2
BFerric enterobactin esteraseprotein26434% helix, 25% strandQ9I0F2

Ligands and binding sites

  • DBS · 2-(2,3-dihydroxy-benzoylamino)-3-hydroxy-propionic acid · ligand · chains A
  • EB4 · N,N',N''-[(3S,7S,11S)-2,6,10-trioxo-1,5,9-trioxacyclododecane-3,7,11-triyl]tris(2,3-dihydroxybenzamide) · ligand · chains B
  • FE · Fe (III) ion · metal · 2 copies · chains A, B
  • NO3 · Nitrate ion · ion · 2 copies · chains A, B
  • EDO · 1,2-ethanediol · additive · 5 copies · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
13120.720.8546EDO
22580.550.7733FE, NO3, EDO, EB4
32110.540.7842DBS
41810.470.7626empty
51270.380.7423empty

Interfaces

1 interface between chains.

  • A–B · 944 Ų buried · 13 hydrogen bonds · protein-protein

Compared structures

  • 6GI1 · Crystal structure of the ferric enterobactin esterase (pfeE) mutant(S157A) from… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9I0F2 · AlphaFold monomer V2.0 prediction for IRON(III) enterobactin esterase (Q9I0F2) · a predicted model of the same protein · chain B against A, TM-score 1.00

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