MolNFT v1 · #150043 · protein
Crystal structure of the ferric enterobactin esterase (pfee) MUTANT(S157A) from pseudomonas aeruginosa in presence of enterobactin
6GI1: “Crystal structure of the ferric enterobactin esterase (pfee) MUTANT(S157A) from pseudomonas aeruginosa in…”. X-ray diffraction, 4 ligands (DBS, EB4, FE), 6 pockets (best druggability 0.72). MolNFT v1 #150043 on GenesisL1: 3D…
- PDB
- 6GI1
- Type
- protein
- Length
- 525 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferric enterobactin esterase
- UniProt
- Q9I0F2
- Ligands
- DBS, EB4, FE, NO3
- Pockets
- 6 · best druggability 0.72
Structure
x-ray diffraction · 2 distinct chains · 33% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ferric enterobactin esterase | protein | 261 | 33% helix, 25% strand | Q9I0F2 |
| B | Ferric enterobactin esterase | protein | 264 | 34% helix, 25% strand | Q9I0F2 |
Ligands and binding sites
- DBS · 2-(2,3-dihydroxy-benzoylamino)-3-hydroxy-propionic acid · ligand · chains A
- EB4 · N,N',N''-[(3S,7S,11S)-2,6,10-trioxo-1,5,9-trioxacyclododecane-3,7,11-triyl]tris(2,3-dihydroxybenzamide) · ligand · chains B
- FE · Fe (III) ion · metal · 2 copies · chains A, B
- NO3 · Nitrate ion · ion · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 5 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 312 | 0.72 | 0.85 | 46 | EDO |
| 2 | 258 | 0.55 | 0.77 | 33 | FE, NO3, EDO, EB4 |
| 3 | 211 | 0.54 | 0.78 | 42 | DBS |
| 4 | 181 | 0.47 | 0.76 | 26 | empty |
| 5 | 127 | 0.38 | 0.74 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 944 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 6GI1 · Crystal structure of the ferric enterobactin esterase (pfeE) mutant(S157A) from… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9I0F2 · AlphaFold monomer V2.0 prediction for IRON(III) enterobactin esterase (Q9I0F2) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9I0F2
- Elsewhere: RCSB PDB 6GI1 · PDBe 6GI1 · UniProt Q9I0F2
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