Research workbench
Crystal structure of the ferric enterobactin esterase (pfee) MUTANT(S157A) from pseudomonas aeruginosa in presence of enterobactin
Analyse Crystal structure of the ferric enterobactin esterase (pfee) MUTANT(S157A) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GI1
- Type
- protein
- Length
- 525 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferric enterobactin esterase
- UniProt
- Q9I0F2
- Ligands
- DBS, EB4, FE, NO3
- Pockets
- 6 · best druggability 0.72
Structure
x-ray diffraction · 2 distinct chains · 33% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ferric enterobactin esterase | protein | 261 | 33% helix, 25% strand | Q9I0F2 |
| B | Ferric enterobactin esterase | protein | 264 | 34% helix, 25% strand | Q9I0F2 |
Ligands and binding sites
- DBS · 2-(2,3-dihydroxy-benzoylamino)-3-hydroxy-propionic acid · ligand · chains A
- EB4 · N,N',N''-[(3S,7S,11S)-2,6,10-trioxo-1,5,9-trioxacyclododecane-3,7,11-triyl]tris(2,3-dihydroxybenzamide) · ligand · chains B
- FE · Fe (III) ion · metal · 2 copies · chains A, B
- NO3 · Nitrate ion · ion · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 5 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 312 | 0.72 | 0.85 | 46 | EDO |
| 2 | 258 | 0.55 | 0.77 | 33 | FE, NO3, EDO, EB4 |
| 3 | 211 | 0.54 | 0.78 | 42 | DBS |
| 4 | 181 | 0.47 | 0.76 | 26 | empty |
| 5 | 127 | 0.38 | 0.74 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 944 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 6GI1 · Crystal structure of the ferric enterobactin esterase (pfeE) mutant(S157A) from… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9I0F2 · AlphaFold monomer V2.0 prediction for IRON(III) enterobactin esterase (Q9I0F2) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9I0F2
- Elsewhere: RCSB PDB 6GI1 · PDBe 6GI1 · UniProt Q9I0F2
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