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Crystal structure of the ferric enterobactin esterase (pfee) MUTANT(S157A) from pseudomonas aeruginosa in presence of enterobactin

Analyse Crystal structure of the ferric enterobactin esterase (pfee) MUTANT(S157A) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6GI1
Type
protein
Length
525 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Ferric enterobactin esterase
UniProt
Q9I0F2
Ligands
DBS, EB4, FE, NO3
Pockets
6 · best druggability 0.72

Structure

x-ray diffraction · 2 distinct chains · 33% helix, 25% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AFerric enterobactin esteraseprotein26133% helix, 25% strandQ9I0F2
BFerric enterobactin esteraseprotein26434% helix, 25% strandQ9I0F2

Ligands and binding sites

  • DBS · 2-(2,3-dihydroxy-benzoylamino)-3-hydroxy-propionic acid · ligand · chains A
  • EB4 · N,N',N''-[(3S,7S,11S)-2,6,10-trioxo-1,5,9-trioxacyclododecane-3,7,11-triyl]tris(2,3-dihydroxybenzamide) · ligand · chains B
  • FE · Fe (III) ion · metal · 2 copies · chains A, B
  • NO3 · Nitrate ion · ion · 2 copies · chains A, B
  • EDO · 1,2-ethanediol · additive · 5 copies · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
13120.720.8546EDO
22580.550.7733FE, NO3, EDO, EB4
32110.540.7842DBS
41810.470.7626empty
51270.380.7423empty

Interfaces

1 interface between chains.

  • A–B · 944 Ų buried · 13 hydrogen bonds · protein-protein

Compared structures

  • 6GI1 · Crystal structure of the ferric enterobactin esterase (pfeE) mutant(S157A) from… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9I0F2 · AlphaFold monomer V2.0 prediction for IRON(III) enterobactin esterase (Q9I0F2) · a predicted model of the same protein · chain B against A, TM-score 1.00

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