MolNFT v1 · #150036 · protein

Crystal structure of the periplasmic domain of xcpy, op crystal form.

6GHU · Type II secretion system protein L: “Crystal structure of the periplasmic domain of xcpy, op crystal form.”. X-ray diffraction, 1 pocket (best druggability 0.51). MolNFT v1 #150036 on GenesisL1: 3D structure, binding sites and…

PDB: 6GHU
Type: protein
Length: 156 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Type II secretion system protein L
UniProt: A0A0A8RGG2
Pockets: 1 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B, A	Type II secretion system protein L	protein	78	32% helix, 38% strand	A0A0A8RGG2

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	57	0.51	0.86	19	empty

Interfaces

1 interface between chains.

B–A · 528 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

6GHU · Crystal structure of the periplasmic domain of XcpY, oP crystal form. · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0A8RGG2
Elsewhere: RCSB PDB 6GHU · PDBe 6GHU · UniProt A0A0A8RGG2

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