Research workbench
Crystal structure of the periplasmic domain of xcpy, op crystal form.
Analyse Crystal structure of the periplasmic domain of xcpy, op crystal form. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GHU
- Type
- protein
- Length
- 156 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Type II secretion system protein L
- UniProt
- A0A0A8RGG2
- Pockets
- 1 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, A | Type II secretion system protein L | protein | 78 | 32% helix, 38% strand | A0A0A8RGG2 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.51 | 0.86 | 19 | empty |
Interfaces
1 interface between chains.
- B–A · 528 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 6GHU · Crystal structure of the periplasmic domain of XcpY, oP crystal form. · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0A8RGG2
- Elsewhere: RCSB PDB 6GHU · PDBe 6GHU · UniProt A0A0A8RGG2
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.