MolNFT v1 · #149970 · protein
Crystal structure of an ancient sequence-reconstructed elongation factor tu (node 262)
6GFU: “Crystal structure of an ancient sequence-reconstructed elongation factor tu (node 262)”. X-ray diffraction, 2 ligands (GDP, MG), 3 pockets (best druggability 0.42). MolNFT v1 #149970 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6GFU
- Type
- protein
- Length
- 386 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Elongation factor tu
- Ligands
- GDP, MG
- Pockets
- 3 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 23% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Elongation factor tu | protein | 386 | 23% helix, 39% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 152 | 0.42 | 0.74 | 29 | empty |
| 2 | 108 | 0.36 | 0.74 | 23 | empty |
| 3 | 68 | 0.33 | 0.76 | 18 | GDP, MG |
Compared structures
- 6GFU · Crystal structure of an ancient sequence-reconstructed Elongation Factor Tu (node 262) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6GFU · PDBe 6GFU
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