MolNFT v1 · #149884 · protein
Cytochrome C in complex with sulfonato-CALIX[8]ARENE, P43212 form soaked with spermine
6GDA: “Cytochrome C in complex with sulfonato-CALIX[8]ARENE, P43212 form soaked with spermine”. X-ray diffraction, 4 ligands (EVB, SPM, HEC). MolNFT v1 #149884 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6GDA
- Type
- protein
- Length
- 108 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00044
- Ligands
- EVB, SPM, HEC, SO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 108 | — | P00044 |
Ligands and binding sites
- EVB · sulfonato-calix[8]arene · ligand · 3 copies · chains A
- SPM · Spermine · ligand · 2 copies
- HEC · Heme C · ligand · chains A
- SO4 · Sulfate ion · ion · 9 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6GDA · Cytochrome c in complex with Sulfonato-calix[8]arene, P43212 form soaked with Spermine · the same entry in another collection · chain A against A, TM-score 1.00
- P00044 · AlphaFold monomer V2.0 prediction for cytochrome C isoform 1 (P00044) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00044
- Elsewhere: RCSB PDB 6GDA · PDBe 6GDA · UniProt P00044
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