MolNFT v1 · #14984 · protein

Crystal structure of the GLUR2 ligand binding core (S1S2J) in complex with willardiine at 1.65 ångströms resolution

1MQJ · Glutamate receptor 2: “Crystal structure of the GLUR2 ligand binding core (S1S2J) in complex with willardiine at 1.65 ångströms…”. X-ray diffraction, 2 ligands (HWD, ZN), 3 pockets (best druggability 0.70). MolNFT v1 #14984 on…

PDB: 1MQJ
Type: protein
Length: 260 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glutamate receptor 2
UniProt: P19491
Ligands: HWD, ZN
Pockets: 3 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 37% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glutamate receptor 2	protein	260	37% helix, 21% strand	P19491

Ligands and binding sites

HWD · 2-amino-3-(2,4-dioxo-3,4-dihydro-2H-pyrimidin-1-yl)-propionic acid · ligand · chains A
ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.70	0.98	17	HWD
2	103	0.37	0.75	21	empty
3	76	0.37	0.77	20	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

1MQJ · Crystal structure of the GluR2 ligand binding core (S1S2J) in complex with willardiine at… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P19491
Elsewhere: RCSB PDB 1MQJ · PDBe 1MQJ · UniProt P19491

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