MolNFT v1 · #149717 · protein
14-3-3SIGMA in complex with a A130BETA3A mutated yap PS127 phosphopeptide
6G8J · 14-3-3 protein sigma: “14-3-3SIGMA in complex with a A130BETA3A mutated yap PS127 phosphopeptide”. X-ray diffraction, 4 ligands (B3A, MG, NA), 1 pocket (best druggability 0.56). MolNFT v1 #149717 on GenesisL1: 3D structure, binding…
- PDB
- 6G8J
- Type
- protein
- Length
- 241 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 14-3-3 protein sigma; ACE-arg-ala-his-sep-ser-pro-bal-ser-leu-gln
- UniProt
- P31947
- Ligands
- B3A, MG, NA, CL
- Pockets
- 1 · best druggability 0.56
Structure
x-ray diffraction · 2 distinct chains · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 14-3-3 protein sigma | protein | 236 | 78% helix, 0% strand | P31947 |
| P | ACE-arg-ala-his-sep-ser-pro-bal-ser-leu-gln | protein | 5 | 0% helix, 0% strand | — |
Ligands and binding sites
- B3A · (3S)-3-aminobutanoic acid · ligand · chains A, P
- MG · Magnesium ion · metal · chains A
- NA · Sodium ion · metal · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 148 | 0.56 | 0.81 | 25 | B3A |
Interfaces
1 interface between chains.
- A–P · 453 Ų buried · 12 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 covalent, 1 modified (covalent ligand, phosphorylation).
Compared structures
- 6G8J · 14-3-3sigma in complex with a A130beta3A mutated YAP pS127 phosphopeptide · the same entry in another collection · chain A against A, TM-score 1.00
- P31947 · AlphaFold monomer V2.0 prediction for 14-3-3 protein sigma (P31947) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P31947
- Elsewhere: RCSB PDB 6G8J · PDBe 6G8J · UniProt P31947
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.