MolNFT v1 · #149710 · protein
E. COLI aminopeptidase N solved by native sad from a dataset collected in 60 second with jungfrau detector
6G8B: “E. COLI aminopeptidase N solved by native sad from a dataset collected in 60 second with jungfrau detector”. X-ray diffraction, 3 ligands (7MF, ZN, NA). MolNFT v1 #149710 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6G8B
- Type
- protein
- Length
- 868 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P04825
- Ligands
- 7MF, ZN, NA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 868 | — | P04825 |
Ligands and binding sites
- 7MF · [(7~{S})-1-bromanyl-6,6-bis(oxidanyl)-4-phenyl-5,7,8,9-tetrahydrobenzo[7]annulen-7-yl]azanium · ligand · chains A
- ZN · Zinc ion · metal · chains A
- NA · Sodium ion · metal · chains A
- DMS · Dimethyl sulfoxide · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6G8B · E. coli Aminopeptidase N solved by Native SAD from a dataset collected in 60 second with… · the same entry in another collection · chain A against A, TM-score 1.00
- P04825 · AlphaFold monomer V2.0 prediction for aminopeptidase N (P04825) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04825
- Elsewhere: RCSB PDB 6G8B · PDBe 6G8B · UniProt P04825
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