MolNFT v1 · #149602 · protein
Structure of the alanine racemase from staphylococcus aureus in complex with an pyridoxal-6- phosphate derivative
6G59: “Structure of the alanine racemase from staphylococcus aureus in complex with an pyridoxal-6- phosphate…”. X-ray diffraction, 4 ligands (EM2, NA, SO4). MolNFT v1 #149602 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6G59
- Type
- protein
- Length
- 771 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P63479
- Ligands
- EM2, NA, SO4, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 387 | — | P63479 |
| B | — | protein | 384 | — | P63479 |
Ligands and binding sites
- EM2 · (6-ethynyl-4-methanoyl-5-oxidanyl-pyridin-3-yl)methyl dihydrogen phosphate · ligand · 2 copies · chains A, B
- NA · Sodium ion · metal · 4 copies · chains A, B
- SO4 · Sulfate ion · ion · 6 copies · chains A, B
- CL · Chloride ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6G59 · Structure of the alanine racemase from Staphylococcus aureus in complex with an… · the same entry in another collection · chain A against A, TM-score 1.00
- P63479 · AlphaFold monomer V2.0 prediction for alanine racemase 1 (P63479) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P63479
- Elsewhere: RCSB PDB 6G59 · PDBe 6G59 · UniProt P63479
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