MolNFT v1 · #149599 · protein
Apo-structure of the alanine racemase from staphylococcus aureus
6G56 · Alanine racemase 1: “Apo-structure of the alanine racemase from staphylococcus aureus”. X-ray diffraction, 1 ligand (SO4), 7 pockets (best druggability 0.81). MolNFT v1 #149599 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6G56
- Type
- protein
- Length
- 763 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alanine racemase 1
- EC
- 5.1.1.1
- UniProt
- P63479
- Ligands
- SO4
- Pockets
- 7 · best druggability 0.81
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alanine racemase 1 (EC 5.1.1.1) | protein | 381 | 32% helix, 25% strand | P63479 |
| B | Alanine racemase 1 (EC 5.1.1.1) | protein | 382 | 32% helix, 25% strand | P63479 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 471 | 0.81 | 0.88 | 72 | SO4, GOL |
| 2 | 341 | 0.80 | 0.90 | 56 | SO4 |
| 3 | 357 | 0.78 | 0.88 | 72 | SO4, GOL |
| 4 | 65 | 0.52 | 0.86 | 16 | empty |
| 5 | 185 | 0.48 | 0.76 | 32 | SO4 |
Interfaces
1 interface between chains.
- A–B · 3208 Ų buried · 37 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P63479
- Elsewhere: RCSB PDB 6G56 · PDBe 6G56 · UniProt P63479
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