MolNFT v1 · #149560 · protein

Crystal structure of semet-labeled mavirus major capsid protein lacking the C-terminal domain

6G43 · Putative major capsid protein: “Crystal structure of semet-labeled mavirus major capsid protein lacking the C-terminal domain”. X-ray diffraction, 20 pockets (best druggability 0.75). MolNFT v1 #149560 on GenesisL1: 3D structure…

PDB: 6G43
Type: protein
Length: 1,545 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative major capsid protein
UniProt: A0A1L4BK98
Pockets: 20 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 14% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Putative major capsid protein	protein	515	14% helix, 38% strand	A0A1L4BK98

Pockets

20 pockets found on a 1 Å grid, 16 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	421	0.75	0.85	45	empty
2	450	0.75	0.84	43	empty
3	605	0.73	0.81	69	empty
4	499	0.73	0.82	54	empty
5	426	0.68	0.80	48	empty

Interfaces

3 interfaces between chains.

A–B · 4448 Å² buried · 59 hydrogen bonds · protein-protein
B–C · 4440 Å² buried · 61 hydrogen bonds · protein-protein
A–C · 4430 Å² buried · 56 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 45 modified (engineered).

Compared structures

6G43 · Crystal structure of SeMet-labeled mavirus major capsid protein lacking the C-terminal… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1L4BK98
Elsewhere: RCSB PDB 6G43 · PDBe 6G43 · UniProt A0A1L4BK98

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