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Crystal structure of semet-labeled mavirus major capsid protein lacking the C-terminal domain
Analyse Crystal structure of semet-labeled mavirus major capsid protein lacking the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6G43
- Type
- protein
- Length
- 1,545 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative major capsid protein
- UniProt
- A0A1L4BK98
- Pockets
- 20 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 14% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Putative major capsid protein | protein | 515 | 14% helix, 38% strand | A0A1L4BK98 |
Pockets
20 pockets found on a 1 Å grid, 16 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 421 | 0.75 | 0.85 | 45 | empty |
| 2 | 450 | 0.75 | 0.84 | 43 | empty |
| 3 | 605 | 0.73 | 0.81 | 69 | empty |
| 4 | 499 | 0.73 | 0.82 | 54 | empty |
| 5 | 426 | 0.68 | 0.80 | 48 | empty |
Interfaces
3 interfaces between chains.
- A–B · 4448 Ų buried · 59 hydrogen bonds · protein-protein
- B–C · 4440 Ų buried · 61 hydrogen bonds · protein-protein
- A–C · 4430 Ų buried · 56 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 45 modified (engineered).
Compared structures
- 6G43 · Crystal structure of SeMet-labeled mavirus major capsid protein lacking the C-terminal… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1L4BK98
- Elsewhere: RCSB PDB 6G43 · PDBe 6G43 · UniProt A0A1L4BK98
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