MolNFT v1 · #149505 · protein + RNA
Structure of hur RRM3 in complex with RNA (uuuuuu)
6G2K · RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3'): “Structure of hur RRM3 in complex with RNA (uuuuuu)”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #149505 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6G2K
- Type
- protein + RNA
- Length
- 248 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3'); Elav-like protein 1
- UniProt
- Q15717
- Ligands
- SO4
Structure
x-ray diffraction · 3 distinct chains · 27% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| R | RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | rna | 6 | — | — |
| A, B | Elav-like protein 1 | protein | 81 | 27% helix, 38% strand | Q15717 |
| C | Elav-like protein 1 | protein | 80 | 28% helix, 39% strand | Q15717 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
4 interfaces between chains.
- R–B · 590 Ų buried · 9 hydrogen bonds · protein-nucleic
- R–A · 427 Ų buried · 12 hydrogen bonds · protein-nucleic
- B–C · 118 Ų buried · 0 hydrogen bonds · protein-protein
- A–B · 78 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 modified (artifact).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q15717
- Elsewhere: RCSB PDB 6G2K · PDBe 6G2K · UniProt Q15717
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