MolNFT v1 · #148994 · protein
Thioredoxin glutathione reductase from schistosoma mansoni in complex with 1,4-BIS(2-HYDROXYETHYL)PIPERAZINE
6FMZ: “Thioredoxin glutathione reductase from schistosoma mansoni in complex with 1,4-BIS(2-HYDROXYETHYL)PIPERAZINE”. X-ray diffraction, 2 ligands (FAD, DVQ), 8 pockets (best druggability 0.80). MolNFT v1 #148994 on GenesisL1: 3D…
- PDB
- 6FMZ
- Type
- protein
- Length
- 588 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thioredoxin glutathione reductase
- EC
- 1.8.1.9
- UniProt
- G4V8J4
- Ligands
- FAD, DVQ
- Pockets
- 8 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thioredoxin glutathione reductase (EC 1.8.1.9) | protein | 588 | 38% helix, 25% strand | G4V8J4 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · chains A
- DVQ · 2-[4-(2-hydroxyethyl)piperazin-1-yl]ethanol · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1170 | 0.80 | 0.81 | 112 | FAD, DVQ |
| 2 | 157 | 0.49 | 0.78 | 23 | empty |
| 3 | 98 | 0.43 | 0.78 | 21 | empty |
| 4 | 77 | 0.42 | 0.79 | 21 | empty |
| 5 | 65 | 0.38 | 0.79 | 18 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6FMZ · Thioredoxin glutathione reductase from Schistosoma mansoni in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G4V8J4
- Elsewhere: RCSB PDB 6FMZ · PDBe 6FMZ · UniProt G4V8J4
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