MolNFT v1 · #148708 · protein

Anabaena apo-C-terminal domain homolog protein

6FEJ · ALL4940 protein: “Anabaena apo-C-terminal domain homolog protein”. X-ray diffraction, 1 ligand (URE), 4 pockets (best druggability 0.73). MolNFT v1 #148708 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6FEJ
Type: protein
Length: 242 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ALL4940 protein
UniProt: Q8YMJ3
Ligands: URE
Pockets: 4 · best druggability 0.73

Structure

x-ray diffraction · 2 distinct chains · 22% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ALL4940 protein	protein	124	23% helix, 42% strand	Q8YMJ3
B	ALL4940 protein	protein	118	21% helix, 42% strand	Q8YMJ3

Ligands and binding sites

URE · Urea · ligand · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	316	0.73	0.85	33	URE
2	271	0.62	0.80	31	empty
3	129	0.48	0.79	26	empty
4	112	0.42	0.77	24	empty

Interfaces

1 interface between chains.

A–B · 761 Å² buried · 10 hydrogen bonds · protein-protein

Compared structures

6FEJ · Anabaena Apo-C-Terminal Domain Homolog Protein · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8YMJ3
Elsewhere: RCSB PDB 6FEJ · PDBe 6FEJ · UniProt Q8YMJ3

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