MolNFT v1 · #148448 · protein
Structure of mycobacterium smegmatis RNA polymerase core
6F6W: “Structure of mycobacterium smegmatis RNA polymerase core”. Electron microscopy, 2 ligands (ZN, MG). MolNFT v1 #148448 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6F6W
- Type
- protein
- Length
- 2,862 residues
- Chains
- 5
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0QSL8, P60281, A0QS66, A0QWT1
- Ligands
- ZN, MG
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 221 | — | A0QSL8 |
| B | — | protein | 233 | — | A0QSL8 |
| C | — | protein | 1090 | — | P60281 |
| D | — | protein | 1242 | — | A0QS66 |
| E | — | protein | 76 | — | A0QWT1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6F6W · Structure of Mycobacterium smegmatis RNA polymerase core · the same entry in another collection · chain E against E, TM-score 1.00
- P60281 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta (P60281) · a predicted model of the same protein · chain C against A, TM-score 0.98
- A0QSL8 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit alpha (A0QSL8) · a predicted model of the same protein · chain A against A, TM-score 0.94
- A0QWT1 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit omega (A0QWT1) · a predicted model of the same protein · chain E against A, TM-score 0.93
- A0QS66 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta' (A0QS66) · a predicted model of the same protein · chain D against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0QSL8
- Every structure of UniProt P60281
- Every structure of UniProt A0QS66
- Every structure of UniProt A0QWT1
- Elsewhere: RCSB PDB 6F6W · PDBe 6F6W · UniProt A0QSL8 · UniProt P60281 · UniProt A0QS66 · UniProt A0QWT1
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