MolNFT v1 · #148440 · protein
Crystal structure of ebolavirus glycoprotein in complex with sertraline
6F6N: “Crystal structure of ebolavirus glycoprotein in complex with sertraline”. X-ray diffraction, 4 ligands (SRE, NAG, MAN). MolNFT v1 #148440 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6F6N
- Type
- protein
- Length
- 384 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q05320, A0A0U3BWW0
- Ligands
- SRE, NAG, MAN, BMA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 253 | — | Q05320 |
| B | — | protein | 131 | — | A0A0U3BWW0 |
Ligands and binding sites
- SRE · (1S,4S)-4-(3,4-dichlorophenyl)-N-methyl-1,2,3,4-tetrahydronaphthalen-1-amine · ligand · chains A, B
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains A, B
- MAN · alpha-D-mannopyranose · sugar · 2 copies
- BMA · beta-D-mannopyranose · sugar
- GOL · Glycerol · additive · 5 copies · chains A, B
- DMS · Dimethyl sulfoxide · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6F6N · Crystal structure of ebolavirus glycoprotein in complex with sertraline · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q05320
- Every structure of UniProt A0A0U3BWW0
- Elsewhere: RCSB PDB 6F6N · PDBe 6F6N · UniProt Q05320 · UniProt A0A0U3BWW0
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