MolNFT v1 · #148380 · protein
Crystal structure of H. pylori purine nucleoside phosphorylase in complex with PO4 and formycin a
6F4X: “Crystal structure of H. pylori purine nucleoside phosphorylase in complex with PO4 and formycin a”. X-ray diffraction, 2 ligands (FMC, PO4). MolNFT v1 #148380 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6F4X
- Type
- protein
- Length
- 1,389 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P56463
- Ligands
- FMC, PO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E | — | protein | 233 | — | P56463 |
| F | — | protein | 224 | — | P56463 |
Ligands and binding sites
- FMC · (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol · ligand · 6 copies · chains A, D, B, E, C, F
- PO4 · Phosphate ion · ion · 3 copies · chains A, D, C, F, B, E
- EDO · 1,2-ethanediol · additive · 12 copies · chains A, D, B, C, F, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6F4X · Crystal structure of H. pylori purine nucleoside phosphorylase in complex with PO4 and… · the same entry in another collection · chain F against F, TM-score 1.00
- P56463 · AlphaFold monomer V2.0 prediction for purine nucleoside phosphorylase deod-type (P56463) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P56463
- Elsewhere: RCSB PDB 6F4X · PDBe 6F4X · UniProt P56463
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