MolNFT v1 · #148369 · protein

Human JMJD5 in its apo form.

6F4M · Jmjc domain-containing protein 5: “Human JMJD5 in its apo form.”. X-ray diffraction, 1 pocket (best druggability 0.75). MolNFT v1 #148369 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6F4M
Type: protein
Length: 235 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Jmjc domain-containing protein 5
EC: 1.14.11.47
UniProt: Q8N371
Pockets: 1 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Jmjc domain-containing protein 5 (EC 1.14.11.47)	protein	235	28% helix, 34% strand	Q8N371

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	485	0.75	0.83	54	empty

Compared structures

6F4M · Human JMJD5 in its apo form. · the same entry in another collection · chain A against A, TM-score 1.00
Q8N371 · AlphaFold monomer V2.0 prediction for bifunctional peptidase and arginyl-hydroxylase… · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8N371
Elsewhere: RCSB PDB 6F4M · PDBe 6F4M · UniProt Q8N371

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