MolNFT v1 · #148243 · protein

Glic mutant D88N

6F10: “Glic mutant D88N”. X-ray diffraction, 3 ligands (PLC, NA, CL). MolNFT v1 #148243 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6F10
Type: protein
Length: 1,555 residues
Chains: 5
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q7NDN8
Ligands: PLC, NA, CL

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E	—	protein	311	—	Q7NDN8

Ligands and binding sites

PLC · Diundecyl phosphatidyl choline · ligand · 2 copies · chains B, C
NA · Sodium ion · metal · 6 copies · chains A, B, C, D, E
CL · Chloride ion · ion · 7 copies · chains A, B, C, D, E
ACT · Acetate ion · additive · 10 copies · chains A, B, C, D, E
LMT · Dodecyl-beta-D-maltoside · additive · 6 copies · chains A, E, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6F10 · GLIC mutant D88N · the same entry in another collection · chain E against E, TM-score 1.00
Q7NDN8 · AlphaFold monomer V2.0 prediction for proton-gated ion channel (Q7NDN8) · a predicted model of the same protein · chain D against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7NDN8
Elsewhere: RCSB PDB 6F10 · PDBe 6F10 · UniProt Q7NDN8

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