Cathepsin L in complex with (3S,14E)-19-chloro-N-(1-cyanocyclopropyl)- 5-oxo-12,17-dioxa-4-AZATRICYCLO[16.2.2.06,11]DOCOSA-1(21),6(11),7,9, 14,18(22),19-heptaene-3-carboxamide

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 22% strand (DSSP).

Ligands and binding sites

• C3E · (3~{S},14~{E})-19-chloranyl-~{N}-(1-cyanocyclopropyl)-5-oxidanylidene-12,17-dioxa-4-azatricyclo[16.2.2.0^{6,11}]docosa-1(21),6(11),7,9,14,18(22),19-heptaene-3-carboxamide · ligand · chains A
• GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Modifications

Observed in the structure: 3 disulfide, 1 covalent (disulfide, covalent ligand).

Compared structures

• 6EZP · CATHEPSIN L IN COMPLEX WITH (3S,14E)-19-chloro-N-(1-cyanocyclopropyl)-5-oxo-12,17-dioxa-4… · the same entry in another collection · chain A against A, TM-score 1.00
• P07711 · AlphaFold monomer V2.0 prediction for procathepsin L (P07711) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P07711
• Elsewhere: RCSB PDB 6EZP · PDBe 6EZP · UniProt P07711