MolNFT v1 · #147920 · protein
HIV hexamer with ligand
6ERN · Gag polyprotein: “HIV hexamer with ligand”. X-ray diffraction, 1 ligand (ATP), 1 pocket (best druggability 0.33). MolNFT v1 #147920 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ERN
- Type
- protein
- Length
- 202 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gag polyprotein
- UniProt
- B6DRA0
- Ligands
- ATP
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 1 distinct chain · 61% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gag polyprotein | protein | 202 | 61% helix, 3% strand | B6DRA0 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 54 | 0.33 | 0.77 | 16 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6ERN · HIV Hexamer with ligand · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B6DRA0
- Elsewhere: RCSB PDB 6ERN · PDBe 6ERN · UniProt B6DRA0
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