MolNFT v1 · #147902 · protein
Ruminococcus gnavus it-sialidase CBM40 bound to ALPHA2,6 sialyllactose
6ER4: “Ruminococcus gnavus it-sialidase CBM40 bound to ALPHA2,6 sialyllactose”. X-ray diffraction, 3 ligands (BGC, GAL, SIA). MolNFT v1 #147902 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ER4
- Type
- protein
- Length
- 383 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A7B557
- Ligands
- BGC, GAL, SIA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 194 | — | A7B557 |
| B | — | protein | 189 | — | A7B557 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 2 copies · chains A, B
- GAL · beta-D-galactopyranose · sugar · 2 copies
- SIA · N-acetyl-alpha-neuraminic acid · sugar · 2 copies · chains A, B
- GOL · Glycerol · additive · 4 copies · chains A, B
- 1PE · Pentaethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ER4 · Ruminococcus gnavus IT-sialidase CBM40 bound to alpha2,6 sialyllactose · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7B557
- Elsewhere: RCSB PDB 6ER4 · PDBe 6ER4 · UniProt A7B557
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