MolNFT v1 · #147740 · protein
Crystal structure of RRP1 from chaetomium thermophilum in space group C2
6EMF · G0S4M2: “Crystal structure of RRP1 from chaetomium thermophilum in space group C2”. X-ray diffraction, 1 ligand (PRO), 1 pocket (best druggability 0.75). MolNFT v1 #147740 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6EMF
- Type
- protein
- Length
- 461 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- G0S4M2
- UniProt
- G0S4M2
- Ligands
- PRO
- Pockets
- 1 · best druggability 0.75
Structure
x-ray diffraction · 2 distinct chains · 70% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | G0S4M2 | protein | 228 | 70% helix, 4% strand | G0S4M2 |
| B | G0S4M2 | protein | 233 | 70% helix, 3% strand | G0S4M2 |
Ligands and binding sites
- PRO · Proline · ligand · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 7 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1182 | 0.75 | 0.78 | 83 | PRO |
Interfaces
1 interface between chains.
- A–B · 637 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 6EMF · Crystal structure of Rrp1 from Chaetomium thermophilum in space group C2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G0S4M2
- Elsewhere: RCSB PDB 6EMF · PDBe 6EMF · UniProt G0S4M2
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