MolNFT v1 · #147686 · protein

Vibrio cholerae neuraminidase complexed with oseltamivir carboxylate

6EKS: “Vibrio cholerae neuraminidase complexed with oseltamivir carboxylate”. X-ray diffraction, 2 ligands (G39, CA). MolNFT v1 #147686 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6EKS
Type: protein
Length: 749 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P0C6E9
Ligands: G39, CA

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	749	—	P0C6E9

Ligands and binding sites

G39 · (3R,4R,5S)-4-(acetylamino)-5-amino-3-(pentan-3-yloxy) cyclohex-1-ene-1-carboxylic acid · ligand · chains A
CA · Calcium ion · metal · 4 copies · chains A
GOL · Glycerol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6EKS · Vibrio cholerae neuraminidase complexed with oseltamivir carboxylate · the same entry in another collection · chain A against A, TM-score 1.00
P0C6E9 · AlphaFold monomer V2.0 prediction for sialidase (P0C6E9) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0C6E9
Elsewhere: RCSB PDB 6EKS · PDBe 6EKS · UniProt P0C6E9

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