MolNFT v1 · #147582 · protein

Dimer of the sortilin VPS10P domain at low pH

6EHO: “Dimer of the sortilin VPS10P domain at low pH”. X-ray diffraction, 3 ligands (NAG, BMA, MAN). MolNFT v1 #147582 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6EHO
Type: protein
Length: 642 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q99523
Ligands: NAG, BMA, MAN

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	642	—	Q99523

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains A
BMA · beta-D-mannopyranose · sugar · 2 copies · chains A
MAN · alpha-D-mannopyranose · sugar · 2 copies

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6EHO · Dimer of the Sortilin Vps10p domain at low pH · the same entry in another collection · chain A against A, TM-score 1.00
Q99523 · AlphaFold monomer V2.0 prediction for sortilin (Q99523) · a predicted model of the same protein · chain A against A, TM-score 0.89

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q99523
Elsewhere: RCSB PDB 6EHO · PDBe 6EHO · UniProt Q99523

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