MolNFT v1 · #147452 · protein
TAURINE:2OG dioxygenase (taud) bound to the vanadyl ion, taurine, and succinate
6EDH: “TAURINE:2OG dioxygenase (taud) bound to the vanadyl ion, taurine, and succinate”. X-ray diffraction, 2 ligands (VVO, TAU). MolNFT v1 #147452 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6EDH
- Type
- protein
- Length
- 562 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P37610
- Ligands
- VVO, TAU
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 281 | — | P37610 |
Ligands and binding sites
- VVO · oxovanadium(2+) · ligand · 2 copies · chains A, B
- TAU · 2-aminoethanesulfonic acid · ligand · chains B
- ACT · Acetate ion · additive · chains A
- SIN · Succinic acid · additive · chains B
- 1PE · Pentaethylene glycol · additive · chains B
- PEG · Di(hydroxyethyl)ether · additive · chains B
- PG4 · Tetraethylene glycol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6EDH · Taurine:2OG dioxygenase (TauD) bound to the vanadyl ion, taurine, and succinate · the same entry in another collection · chain A against A, TM-score 1.00
- P37610 · AlphaFold monomer V2.0 prediction for alpha-ketoglutarate-dependent taurine dioxygenase… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P37610
- Elsewhere: RCSB PDB 6EDH · PDBe 6EDH · UniProt P37610
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