MolNFT v1 · #147348 · protein
Structure of ebov gpcl in complex with the pan-ebolavirus mab adi- 15878
6EA7: “Structure of ebov gpcl in complex with the pan-ebolavirus mab adi- 15878”. X-ray diffraction, 5 ligands (NAG, MAN, BMA). MolNFT v1 #147348 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6EA7
- Type
- protein
- Length
- 2,075 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P87666, O11457
- Ligands
- NAG, MAN, BMA, GAL, FUC
Structure
x-ray diffraction · 12 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 163 | — | P87666 |
| B | — | protein | 106 | — | O11457 |
| C | — | protein | 159 | — | P87666 |
| D | — | protein | 104 | — | O11457 |
| E | — | protein | 156 | — | P87666 |
| F | — | protein | 103 | — | O11457 |
| H | — | protein | 213 | — | — |
| L | — | protein | 210 | — | — |
| M | — | protein | 217 | — | — |
| N | — | protein | 211 | — | — |
| Q | — | protein | 222 | — | — |
| R | — | protein | 211 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 16 copies · chains A, B, F, H, L, C, D, M, N, E
- MAN · alpha-D-mannopyranose · sugar · 6 copies · chains L, C
- BMA · beta-D-mannopyranose · sugar · 3 copies · chains A, H, L, M
- GAL · beta-D-galactopyranose · sugar · 2 copies · chains M
- FUC · alpha-L-fucopyranose · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6EA7 · Structure of EBOV GPcl in complex with the pan-ebolavirus mAb ADI-15878 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P87666
- Every structure of UniProt O11457
- Elsewhere: RCSB PDB 6EA7 · PDBe 6EA7 · UniProt P87666 · UniProt O11457
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