MolNFT v1 · #147337 · protein
DHF79 filament
6E9V: “DHF79 filament”. Electron microscopy, 20 pockets (best druggability 0.70). MolNFT v1 #147337 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6E9V
- Type
- protein
- Length
- 5,486 residues
- Chains
- 26
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DHF79 filament
- Pockets
- 20 · best druggability 0.70
Structure
electron microscopy · 1 distinct chain · 88% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| Q, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, R, S, T, U, V, W, X, Y, Z | DHF79 filament | protein | 211 | 88% helix, 0% strand | — |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 920 | 0.70 | 0.75 | 78 | empty |
| 2 | 883 | 0.70 | 0.75 | 79 | empty |
| 3 | 833 | 0.70 | 0.76 | 81 | empty |
| 4 | 771 | 0.69 | 0.76 | 67 | empty |
| 5 | 724 | 0.69 | 0.76 | 66 | empty |
Interfaces
43 interfaces between chains.
- A–E · 375 Ų buried · 4 hydrogen bonds · protein-protein
- O–T · 374 Ų buried · 4 hydrogen bonds · protein-protein
- E–I · 374 Ų buried · 4 hydrogen bonds · protein-protein
- H–L · 373 Ų buried · 4 hydrogen bonds · protein-protein
- S–W · 373 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 6E9V · DHF79 filament · the same entry in another collection · chain I against I, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6E9V · PDBe 6E9V
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