MolNFT v1 · #147166 · protein
Crystal structure of the drosophila melanogaster polypeptide N- acetylgalactosaminyl transferase PGANT9A in complex with udp and MN2+
6E4Q: “Crystal structure of the drosophila melanogaster polypeptide N- acetylgalactosaminyl transferase PGANT9A in…”. X-ray diffraction, 3 ligands (UDP, NAG, MN). MolNFT v1 #147166 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6E4Q
- Type
- protein
- Length
- 2,013 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8MRC9
- Ligands
- UDP, NAG, MN
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 505 | — | Q8MRC9 |
| B, C | — | protein | 503 | — | Q8MRC9 |
| D | — | protein | 502 | — | Q8MRC9 |
Ligands and binding sites
- UDP · Uridine-5'-diphosphate · ligand · 4 copies · chains A, B, C, D
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A, B, C, D
- MN · Manganese (II) ion · metal · 4 copies · chains A, B, C, D
- EDO · 1,2-ethanediol · additive · 6 copies · chains A, B, C, D
- GOL · Glycerol · additive · 2 copies · chains B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6E4Q · Crystal Structure of the Drosophila Melanogaster Polypeptide N-Acetylgalactosaminyl… · the same entry in another collection · chain D against D, TM-score 1.00
- Q8MRC9 · AlphaFold monomer V2.0 prediction for putative polypeptide… · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8MRC9
- Elsewhere: RCSB PDB 6E4Q · PDBe 6E4Q · UniProt Q8MRC9
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