MolNFT v1 · #147124 · protein
The structure of the C-terminal domains (C123) of streptococcus intermedius antigen I/II (pas)
6E3F · Probable cell-surface antigen I/II: “The structure of the C-terminal domains (C123) of streptococcus intermedius antigen I/II (pas)”. X-ray diffraction, 1 ligand (CA), 2 pockets (best druggability 0.52). MolNFT v1 #147124 on…
- PDB
- 6E3F
- Type
- protein
- Length
- 497 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable cell-surface antigen I/II
- UniProt
- Q9KW51
- Ligands
- CA
- Pockets
- 2 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable cell-surface antigen I/II | protein | 497 | 11% helix, 41% strand | Q9KW51 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 173 | 0.52 | 0.79 | 22 | empty |
| 2 | 60 | 0.30 | 0.75 | 16 | empty |
Modifications
Observed in the structure: 2 isopeptide (isopeptide).
Compared structures
- 6E3F · The structure of the C-terminal domains (C123) of Streptococcus intermedius antigen I/II… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9KW51 · AlphaFold monomer V2.0 prediction for probable cell-surface antigen I/II (Q9KW51) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KW51
- Elsewhere: RCSB PDB 6E3F · PDBe 6E3F · UniProt Q9KW51
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