MolNFT v1 · #147038 · protein

Pdb: AFTMEM16 reconstituted in nanodiscs in the presence of CA2+

6E0H · Plasma membrane channel protein (AQY1), putative: “Pdb: AFTMEM16 reconstituted in nanodiscs in the presence of CA2+”. Electron microscopy, 1 ligand (CA), 20 pockets (best druggability 0.80). MolNFT v1 #147038 on GenesisL1: 3D…

PDB: 6E0H
Type: protein
Length: 1,172 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Plasma membrane channel protein (AQY1), putative
UniProt: Q4WA18
Ligands: CA
Pockets: 20 · best druggability 0.80

Structure

electron microscopy · 1 distinct chain · 64% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B, A	Plasma membrane channel protein (AQY1), putative	protein	586	64% helix, 2% strand	Q4WA18

Ligands and binding sites

CA · Calcium ion · metal · 4 copies · chains B, A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

20 pockets found on a 1 Å grid, 14 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	946	0.80	0.81	103	empty
2	735	0.79	0.83	94	empty
3	982	0.78	0.80	96	empty
4	837	0.72	0.77	65	CA
5	602	0.71	0.79	56	CA

Interfaces

1 interface between chains.

B–A · 3381 Å² buried · 10 hydrogen bonds · protein-protein

Compared structures

6E0H · PDB: afTMEM16 reconstituted in nanodiscs in the presence of Ca2+ · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q4WA18
Elsewhere: RCSB PDB 6E0H · PDBe 6E0H · UniProt Q4WA18

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