MolNFT v1 · #146979 · protein

C-terminal condensation domain of ebony in complex with L-dopamine

6DYO: “C-terminal condensation domain of ebony in complex with L-dopamine”. X-ray diffraction, 2 ligands (LDP, CA), 1 pocket (best druggability 0.79). MolNFT v1 #146979 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6DYO
Type: protein
Length: 213 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ebony
UniProt: A4GK78
Ligands: LDP, CA
Pockets: 1 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ebony	protein	213	39% helix, 23% strand	A4GK78

Ligands and binding sites

LDP · L-dopamine · ligand · chains A
CA · Calcium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	476	0.79	0.86	56	LDP

Compared structures

6DYO · C-terminal condensation domain of Ebony in complex with L-Dopamine · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A4GK78
Elsewhere: RCSB PDB 6DYO · PDBe 6DYO · UniProt A4GK78

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.