MolNFT v1 · #146840 · protein

Crystal structure of a methyltransferase

6DUB: “Crystal structure of a methyltransferase”. X-ray diffraction, 1 ligand (UNX). MolNFT v1 #146840 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6DUB
Type: protein
Length: 452 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q5VVY1
Ligands: UNX

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	223	—	Q5VVY1
B	—	protein	219	—	Q5VVY1
E, F	—	protein	5	—	—

Ligands and binding sites

UNX · Unknown atom or ion · ion · 60 copies · chains A, B, E, F
GOL · Glycerol · additive · 3 copies · chains A, E, B, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6DUB · Crystal structure of a methyltransferase · the same entry in another collection · chain E against E, TM-score 1.00
Q5VVY1 · AlphaFold monomer V2.0 prediction for alpha N-terminal protein methyltransferase 1B… · a predicted model of the same protein · chain B against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5VVY1
Elsewhere: RCSB PDB 6DUB · PDBe 6DUB · UniProt Q5VVY1

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